core

ROI detection and signal extraction

Constrained NMF for calcium imaging

Robust cell extraction

Non-rigid motion correction

Markerless pose estimation

Orofacial and behavioral tracking

Population activity from GCaMP signals

Unified spike sorting API

Template-matching spike sorter

Allen Institute pipeline

High-density probe preprocessing

Reinforcement learning models

Belief updating under uncertainty

Temporal preference modeling

Impulse control metrics

Power spectra and band power via FFT

Time-frequency decomposition

Instantaneous amplitude and phase

Phase locking and phase-amplitude coupling

Frequency-resolved coupling between sites

Connectivity across all bands; beta/delta significant in paper

Pairwise neural synchrony

Directed functional connectivity

Trial-locked responses and spectral perturbation

Self-supervised ViT visual representations

Motion features for video encoding

Regularized feature-to-BOLD readout

Region-specific reliability scaling

Falsification-first evaluation

Hooked-transformer activation introspection

Circuit discovery via path interventions

Causal localization of computation

Automated circuit-graph search

Behavior under edited activations

Decoding features from representations

Head-level pattern inspection

Directed edits and manifold analysis

Masked and contrastive objectives

Attention over extended neural context

Linear-time sequence modeling

Cross-attention over heterogeneous inputs

Latent compression of neural signals

Parameter-efficient fine-tuning

Sharded large-model training

Stitching subjects and sessions

Video, audio, text, and neural tokenizers

Joint attention across streams

CLIP-style representation binding

Linear / ridge encoding heads

Robustness to missing inputs

Harmonized tokens across sensors

Workflow and provenance modeling

Neurodata Without Borders format

Chunked array storage

AWS, parallel pipelines