Buildactive

Element Calcium Imaging

DataJoint Element for calcium imaging analysis

Importance

100

DataJoint Element for multi-photon calcium imaging analysis.

Domains

Neural Data Infrastructure

Why It Matters

Calcium imaging data requires motion correction, cell detection, and signal extraction. This Element standardizes the workflow from raw movies to neural traces.

What I Built

DataJoint schema for Suite2p and CaImAn
Automated motion correction pipeline
ROI detection and signal extraction
Quality control metrics and visualization

Technical Highlights

Large-file handling with chunked processingGPU acceleration for motion correctionMulti-plane imaging supportIntegration with behavioral timestamps

GitHub Repository

Primary language: Jupyter Notebook

DataJoint Element for multi-photon calcium imaging analysis with CaImAn and Suite2p

View on GitHub

project

Loading signal

Preparing the next layer of the atlas.

Element Calcium Imaging

Why It Matters

What I Built

Technical Highlights

GitHub Repository

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Element Calcium Imaging

Why It Matters

What I Built

Technical Highlights

GitHub Repository

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